Course material for the fall 2015 edition of INF-BIOx121ΒΆ
NOTE: for other course editions, check out this website.
NOTE The course Wiki, with all important information, is here.
NOTE if you are comfortable with git and github, all material is available from this github repository. Make sure to switch to the 2015 branch.
Material will be added as it comes in.
Unix pre-course for people new to the unix command-line
- content of the etherpad
Intro to High Throughput Sequencing & Applications and Principles and problems of HTS data analysis
- schedule of what was discussed, with links web pdf
- slides pptx
- the basic skills we want you to learn pptx
- content of the etherpad
Experimental design
- lecture slides pptx
- etherpad content is in the one linked to above
Quality control of sequencing reads
Mapping and variant calling
- slides part 1 pdf
- slides part 2 pdf
- scripts and other files used during the practicals are here
- content of the etherpad
Galaxy
- slides pdf
De novo genome assembly
- start here
How to become an efficient bioinformatician
RNA seq: differential expression analysis
Statistical genomics