Course material for the fall 2015 edition of INF-BIOx121 ======================================================== NOTE: for other course editions, check out `this website `__. NOTE The course Wiki, with all important information, is `here `__. NOTE if you are comfortable with git and github, all material is available from `this github repository `__. Make sure to switch to the `2015` branch. Material will be added as it comes in. **Unix pre-course for people new to the unix command-line** - content of the `etherpad `__ **Intro to High Throughput Sequencing & Applications and Principles and problems of HTS data analysis** - schedule of what was discussed, with links `web `__ `pdf `__ - slides `pptx `__ - the basic skills we want you to learn `pptx `__ - content of the `etherpad `__ **Experimental design** - lecture slides `pptx `__ - etherpad content is in the one linked to above **Quality control of sequencing reads** - Exercises `web `__ `pdf `__ - etherpad content is in the one linked to above **Mapping and variant calling** - slides part 1 `pdf `__ - slides part 2 `pdf `__ - scripts and other files used during the practicals are `here `__ - content of the `etherpad `__ **Galaxy** - slides `pdf `__ **De novo genome assembly** - start `here `__ **How to become an efficient bioinformatician** - program :doc:`Bioinformaticians_day/index` **RNA seq: differential expression analysis** - slides part 1 `pdf `__ - slides part 2 `pdf `__ - slides part 3 `pdf `__ **Statistical genomics** - slides `pdf `__ - reproducibility exercise `variant A `__ `variant B `__