Coming of age: ten years of next-generation sequencing technologies, Goodwin et. al., Nature Reviews Genetics 2016

Figures 1-4 from Sequencing technologies — the next generation, Metzker, Nature Reviews Genetics 2009

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis, Fabbro et. al., PLoS ONE 2013

Sequencing depth and coverage: key considerations in genomic analyses, Sims et. al., Nature Reviews Genetics 2014

A field guide to whole‐genome sequencing, assembly and annotation, Ekblom and Wolf, Evolutionary Applications 2014

The Theory and Practice of Genome Sequence Assembly, Simpson and Pop, Annual Review of Genomics and Human Genetics 2015

Benchmarking short sequence mapping tools , Hatem et. al., BMC Bioinformatics 2013

Genotype and SNP calling from next-generation sequencing data, Nielsen et. al., Nature Reviews Genetics 2011

A survey of best practices for RNA-seq data analysis, Conesa et. al. Genome Biology 2016

The power and promise of RNA‐seq in ecology and evolution, Todd et. al., Molecular Ecology 2016

The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment, Subhajyoti et. al., Briefings in Bioinformatics 2013

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome, Simovski et. al., BioRxiv preprint

Ten Simple Rules for Reproducible Computational Research, Sandve et. al., PLoS Computational Biology 2013