De novo genome assemblyΒΆ
A module in the fall 2016 edition of INF-BIOx121
Slides:
- Introduction to the assembly module
- Principles and problems of de novo genome assembly
- De novo assembly using velvet
- Assembly before and after
Practicals:
- Schedule for the Assembly module
- Assembly using velvet
- Mapping reads to an assembly and visualising the results
- Assembly improvement using REAPR
- Assembly using SPADES
- Assembly using CANU
- Assembly using miniasm+racon
- Comparing assemblies to the reference
- Mapping PacBio and MinION reads using
bwa - Sources of programs, scripts, datafiles etc
Content of the etherpad