INF-BIOx121
2017
Lecture slides
Unix / R pre-course
Fundamentals of Molecular biology
High throughput sequencing (HTS)
Algorithms
De novo
genome assembly
RNA-seq analysis
Variant calling
Statistical genomics
INF-BIOx121
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Lecture slides
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Lecture slides
¶
Unix / R pre-course
¶
Aug 22: Slides from Pre-course
Fundamentals of Molecular biology
¶
Sep 4 : Slides from Molecular Biology
High throughput sequencing (HTS)
¶
Sep 4 : Slides from HTS
Sep 5 : Slides from HTS - library prep
Sep 5 : Slides from HTS - PacBio
Sep 5 : Slides from HTS - Basic file formats
Sep 6 : Slides from HTS - Data pre-processing
Script - HTS
Algorithms
¶
Sep 6 : Slides from HTS - Algorithms alignment
Sep 11 : Slides from HTS - Algorithms mapping
Sep 11 : Exercise from HTS - Algorithms mapping
Sep 11 : Exercise Answers from HTS - Algorithms mapping
De novo
genome assembly
¶
Sep 11 : Slides and practicals from genome assembly
Sep 11 : Link to Etherpad
RNA-seq analysis
¶
Sep 18 : Slides from RNA-seq - Introduction
Sep 18 : Slides from RNA-seq - Transcriptome
Sep 19 : Slides from RNA-seq - Experimental design
Sep 19 : Slides from RNA-seq - Differential expression
Sep 20 : Slides from RNA-seq - After DE
Sep 18-20 : Slides from RNA-seq - Case study (Updated)
Script - RNASeq
Script - CummeRbund
Script - DESeq2
Variant calling
¶
Sep 25 : Slides from VC - slide deck 1
Sep 25 : Slides from VC - slide deck 2
Sep 26 : Slides from VC - slide deck 3
Sep 27 : Slides from VC - slide deck 4
Sep 27 : Bayesian statistic example
Sep 27 : Slides from VC - slide deck 5
Sep 27 : Slides from VC - slide deck 6
Statistical genomics
¶
Oct 09 : Slides from Statistical genomics - part 1
Oct 09 : Slides from Statistical genomics - complete
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